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L'unité en quelques chiffres clés :
|
Créé en 2022 |
77 membres |
5 équipes de recherche |
317 publications (2015-2026) |
45 soutenances de thèse (2015-2026) |
Les équipes :
Publications récentes :
Álvarez-Sánchez, Elena; Huet, Simon; Téletchéa, Stéphane
Molecular determinants of TNFR1:TNFα binding and dynamics in a physiological membrane environment Article de journal
Dans: Current Research in Structural Biology, vol. 26, p. 100177, 2026.
@article{TeletcheaTNF2025,
title = {Molecular determinants of TNFR1:TNFα binding and dynamics in a physiological membrane environment},
author = {Elena Álvarez-Sánchez and Simon Huet and Stéphane Téletchéa},
editor = {Elsevier},
doi = {10.1016/j.crstbi.2025.100177},
year = {2026},
date = {2026-06-01},
urldate = {2025-12-18},
journal = {Current Research in Structural Biology},
volume = {26},
pages = {100177},
abstract = {Tumor Necrosis Factor alpha (TNFα) is a pro-inflammatory cytokine critical for regulating cell survival and death. Under pathological conditions, excessive TNFα activity can lead to chronic inflammation, contributing to diseases such as inflammatory bowel disease and other autoimmune disorders. While structural studies have elucidated the atomistic details of TNFα binding to its receptor, TNF Receptor 1 (TNFR1), the influence of the membrane environment on this interaction remains poorly characterized experimentally. In this study, we employed advanced all-atom Gaussian accelerated molecular dynamics simulations to investigate how lipid-mediated interactions modulate the TNFα–TNFR1 complex. We identified key residues on both the cytokine and its receptor that govern trimer assembly, receptor binding, and potential pathological alterations. Our analysis confirmed previously identified functional sites and revealed new residues likely to contribute to the structural stability and dynamics of the complex. These findings provide a more comprehensive understanding of the molecular determinants of TNF signaling and offer a foundation for future experimental investigations into the receptor-ligand interface and membrane-mediated regulation.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Wu, Yue; Zhao, Xue; Chen, Jing Xuan; Chaumier, Timothée; Tirichine, Leïla
Dans: New Phytologist, vol. 249, no. 5, p. 2421–2434, 2026, ISSN: 1469-8137.
@article{Wu2025,
title = {The RING1 subunit of Polycomb Repressive Complex 1 monoubiquitinates histone H2A and mediates repression independently of Polycomb Repressive Complex 2 in the model diatom \textit{Phaeodactylum tricornutum}},
author = {Yue Wu and Xue Zhao and Jing Xuan Chen and Timothée Chaumier and Leïla Tirichine},
doi = {10.1111/nph.70802},
issn = {1469-8137},
year = {2026},
date = {2026-03-00},
urldate = {2026-03-00},
journal = {New Phytologist},
volume = {249},
number = {5},
pages = {2421--2434},
publisher = {Wiley},
abstract = {<jats:title>Summary</jats:title>
<jats:p>
<jats:list list-type="bullet">
<jats:list-item>
<jats:p>
Polycomb Repressive Complex 1 (PRC1) and its associated mark, H2A monoubiquitination (H2Aub), cooperate with PRC2 for transcriptional silencing in multicellular organisms. However, PRC1 is absent from many unicellular lineages, leaving its functional conservation and relationship with PRC2 unclear. In the model diatom
<jats:italic>Phaeodactylum tricornutum</jats:italic>
, the role of the PRC1 subunit RING1 was investigated to assess whether PRC1‐mediated repression is evolutionary conserved and how it interacts with PRC2.
</jats:p>
</jats:list-item>
<jats:list-item>
<jats:p>RING1 knockout mutants were generated to investigate H2Aub deposition. Genome‐wide H2Aub profiles were integrated with existing H3K27me3 maps, and transcriptome analyses were performed to compare RING1 and the PRC2 catalytic subunit Enhancer of Zeste mutants, thereby evaluating their respective contributions to gene and transposable elements (TEs) repression.</jats:p>
</jats:list-item>
<jats:list-item>
<jats:p>Loss of RING1 abolished H2Aub and revealed that H2Aub predominantly marks repressed genes lacking H3K27me3, while both marks colocalize on TEs. Transcriptome data indicate that H2Aub primarily mediates repression of genes with high H2Aub enrichment, whereas TEs marked by both H2Aub and H3K27me3 are mainly regulated by H3K27me3.</jats:p>
</jats:list-item>
<jats:list-item>
<jats:p>
These results demonstrate that PRC1 and PRC2, which originated before multicellularity, act independently to establish transcriptional silencing in
<jats:italic>P. tricornutum</jats:italic>
. PRC1 is functionally conserved in this diatom, with H2Aub and H3K27me3 fulfilling distinct yet complementary regulatory roles.
</jats:p>
</jats:list-item>
</jats:list>
</jats:p>},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
<jats:p>
<jats:list list-type="bullet">
<jats:list-item>
<jats:p>
Polycomb Repressive Complex 1 (PRC1) and its associated mark, H2A monoubiquitination (H2Aub), cooperate with PRC2 for transcriptional silencing in multicellular organisms. However, PRC1 is absent from many unicellular lineages, leaving its functional conservation and relationship with PRC2 unclear. In the model diatom
<jats:italic>Phaeodactylum tricornutum</jats:italic>
, the role of the PRC1 subunit RING1 was investigated to assess whether PRC1‐mediated repression is evolutionary conserved and how it interacts with PRC2.
</jats:p>
</jats:list-item>
<jats:list-item>
<jats:p>RING1 knockout mutants were generated to investigate H2Aub deposition. Genome‐wide H2Aub profiles were integrated with existing H3K27me3 maps, and transcriptome analyses were performed to compare RING1 and the PRC2 catalytic subunit Enhancer of Zeste mutants, thereby evaluating their respective contributions to gene and transposable elements (TEs) repression.</jats:p>
</jats:list-item>
<jats:list-item>
<jats:p>Loss of RING1 abolished H2Aub and revealed that H2Aub predominantly marks repressed genes lacking H3K27me3, while both marks colocalize on TEs. Transcriptome data indicate that H2Aub primarily mediates repression of genes with high H2Aub enrichment, whereas TEs marked by both H2Aub and H3K27me3 are mainly regulated by H3K27me3.</jats:p>
</jats:list-item>
<jats:list-item>
<jats:p>
These results demonstrate that PRC1 and PRC2, which originated before multicellularity, act independently to establish transcriptional silencing in
<jats:italic>P. tricornutum</jats:italic>
. PRC1 is functionally conserved in this diatom, with H2Aub and H3K27me3 fulfilling distinct yet complementary regulatory roles.
</jats:p>
</jats:list-item>
</jats:list>
</jats:p>
Khatei, Ananya; Tirichine, Leïla; Sidiq, M. Junaid; Cock, J. Mark; Juterbock, Alexander
Comparative view of DNA methylation in stramenopiles and other eukaryotes: Focus on 5-methylcytosine Article de journal
Dans: Algal Research, vol. 94, 2026, ISSN: 2211-9264.
@article{Khatei2026,
title = {Comparative view of DNA methylation in stramenopiles and other eukaryotes: Focus on 5-methylcytosine},
author = {Ananya Khatei and Leïla Tirichine and M. Junaid Sidiq and J. Mark Cock and Alexander Juterbock},
doi = {10.1016/j.algal.2026.104551},
issn = {2211-9264},
year = {2026},
date = {2026-03-00},
urldate = {2026-03-00},
journal = {Algal Research},
volume = {94},
publisher = {Elsevier BV},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Mahoudeau, Louise; Crétin, Pauline; Joublin-Delavat, Aurélie; Rodrigues, Sophie; Guillouche, Clara; Louvet, Isabelle; Bienvenu, Nadège; Geslin, Claire; Dulaquais, Gabriel; Maguer, Jean-François; Delavat, François
The interplay between the marine diazotroph Vibrio diazotrophicus and its prophage shapes both biofilm structure and nitrogen release Article de journal
Dans: Appl Environ Microbiol, vol. 92, no. 1, 2026, ISSN: 1098-5336.
@article{Mahoudeau2026,
title = {The interplay between the marine diazotroph \textit{Vibrio diazotrophicus} and its prophage shapes both biofilm structure and nitrogen release},
author = {Louise Mahoudeau and Pauline Crétin and Aurélie Joublin-Delavat and Sophie Rodrigues and Clara Guillouche and Isabelle Louvet and Nadège Bienvenu and Claire Geslin and Gabriel Dulaquais and Jean-François Maguer and François Delavat},
editor = {Julia C. van Kessel},
doi = {10.1128/aem.01564-25},
issn = {1098-5336},
year = {2026},
date = {2026-01-27},
urldate = {2026-01-27},
journal = {Appl Environ Microbiol},
volume = {92},
number = {1},
publisher = {American Society for Microbiology},
abstract = {<jats:title>ABSTRACT</jats:title>
<jats:sec>
<jats:title/>
<jats:p>
Marine environments are frequently oligotrophic, characterized by low amount of bioassimilable nitrogen sources. At the global scale, the microbial fixation of N₂, or diazotrophy, represents the primary source of fixed nitrogen in pelagic marine ecosystems, playing a key role in supporting primary production and driving the export of organic matter to the deep ocean. However, given the high energetic cost of N₂ fixation, the active release of fixed nitrogen by diazotrophs appears counterintuitive, suggesting the existence of alternative passive release pathways that remain understudied to date. Here, we show that the marine non-cyanobacterial diazotroph
<jats:italic toggle="yes">Vibrio diazotrophicus</jats:italic>
is endowed with a prophage belonging to the
<jats:italic toggle="yes">Myoviridae</jats:italic>
family, whose expression is induced under anoxic and biofilm-forming conditions. We demonstrate that this prophage can spontaneously excise from the genome of its host and that it forms intact and infective phage particles. Moreover, phage-mediated host cell lysis leads to increased biofilm production compared with a prophage-free derivative mutant and to increased release of dissolved organic carbon and ammonium. Altogether, the results suggest that viruses may play a previously unrecognized role in oceanic ecosystem dynamics by structuring microhabitats suitable for diazotrophy and by contributing to the recycling of (in)organic matter.
</jats:p>
</jats:sec>
<jats:sec>
<jats:title>IMPORTANCE</jats:title>
<jats:p>
Diazotrophs are key players in ocean functioning by providing fixed nitrogen to ecosystems and fueling primary production. However, from a physiological point of view, the active release of nitrogenous compounds by diazotrophs is paradoxical, since they would invest in an energy-intensive process and supply nutrient to non-sibling cells, with the risk of being outcompeted. Therefore, alternative ways leading to the release of fixed nitrogen must exist. Here, we show that the marine non-cyanobacterial diazotroph
<jats:italic toggle="yes">Vibrio diazotrophicus</jats:italic>
possesses one prophage, whose activation leads to cell death, increased biofilm production, and the release of dissolved organic compounds and ammonium. Taken together, our results provide evidence that marine phage–diazotroph interplay leads to the creation of microhabitats suitable for diazotrophy, such as biofilm, and to nutrient cycling, and contributes to better understanding of the role of viruses in marine ecosystems.
</jats:p>
</jats:sec>},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
<jats:sec>
<jats:title/>
<jats:p>
Marine environments are frequently oligotrophic, characterized by low amount of bioassimilable nitrogen sources. At the global scale, the microbial fixation of N₂, or diazotrophy, represents the primary source of fixed nitrogen in pelagic marine ecosystems, playing a key role in supporting primary production and driving the export of organic matter to the deep ocean. However, given the high energetic cost of N₂ fixation, the active release of fixed nitrogen by diazotrophs appears counterintuitive, suggesting the existence of alternative passive release pathways that remain understudied to date. Here, we show that the marine non-cyanobacterial diazotroph
<jats:italic toggle="yes">Vibrio diazotrophicus</jats:italic>
is endowed with a prophage belonging to the
<jats:italic toggle="yes">Myoviridae</jats:italic>
family, whose expression is induced under anoxic and biofilm-forming conditions. We demonstrate that this prophage can spontaneously excise from the genome of its host and that it forms intact and infective phage particles. Moreover, phage-mediated host cell lysis leads to increased biofilm production compared with a prophage-free derivative mutant and to increased release of dissolved organic carbon and ammonium. Altogether, the results suggest that viruses may play a previously unrecognized role in oceanic ecosystem dynamics by structuring microhabitats suitable for diazotrophy and by contributing to the recycling of (in)organic matter.
</jats:p>
</jats:sec>
<jats:sec>
<jats:title>IMPORTANCE</jats:title>
<jats:p>
Diazotrophs are key players in ocean functioning by providing fixed nitrogen to ecosystems and fueling primary production. However, from a physiological point of view, the active release of nitrogenous compounds by diazotrophs is paradoxical, since they would invest in an energy-intensive process and supply nutrient to non-sibling cells, with the risk of being outcompeted. Therefore, alternative ways leading to the release of fixed nitrogen must exist. Here, we show that the marine non-cyanobacterial diazotroph
<jats:italic toggle="yes">Vibrio diazotrophicus</jats:italic>
possesses one prophage, whose activation leads to cell death, increased biofilm production, and the release of dissolved organic compounds and ammonium. Taken together, our results provide evidence that marine phage–diazotroph interplay leads to the creation of microhabitats suitable for diazotrophy, such as biofilm, and to nutrient cycling, and contributes to better understanding of the role of viruses in marine ecosystems.
</jats:p>
</jats:sec>
Álvarez-Sánchez, Elena; Offmann, Bernard; Huet, Simon; Téletchéa, Stéphane
Energetics Decomposition of Sac7d:DNA Decrypts Amino Acids Role Without DNA Sequence Selectivity Article de journal
Dans: Journal Of Molecular Recognition, vol. 39, iss. 1, p. e70021, 2026.
@article{TeletcheaSac7d2025,
title = {Energetics Decomposition of Sac7d:DNA Decrypts Amino Acids Role Without DNA Sequence Selectivity},
author = {Elena Álvarez-Sánchez and Bernard Offmann and Simon Huet and Stéphane Téletchéa},
editor = {Wiley},
doi = {10.1002/jmr.70021},
year = {2026},
date = {2026-01-05},
urldate = {2025-12-15},
journal = {Journal Of Molecular Recognition},
volume = {39},
issue = {1},
pages = {e70021},
abstract = {Sac7d is a 7 kDa protein belonging to the class of the small chromosomal proteins from archeon Sulfolobus acidocaldarius. Sac7d was discovered in 1974 in Yellowstone National Parks geysers, and studied extensively since then for its remarkable stability at large pH and temperature ranges. Sac7d binds to the DNA minor groove, thereby protecting the host genome from extreme conditions by increasing the DNA melting temperature. In this study, we analyzed the Sac7d-DNA complex using 1 μs molecular dynamics simulations. The interaction energy of the interface was decomposed using Molecular Mechanics with Generalized Born Surface Area (MM/GBSA) to determine the residues that contributed most significantly to DNA binding. Out of 12 amino acids considered essential for DNA binding, three were newly identified in this study and had not been previously reported. One of these new amino acids, R63, may be involved in a dynamic protein-DNA interaction. The simulations performed also revealed a sliding motion of Sac7d over double-stranded DNA, suggesting a minimal sequence dependence interaction. Our analysis thus provides novel insights into how the Sac7d chaperones allow to protect DNA from degradation in extreme conditions. },
keywords = {},
pubstate = {published},
tppubtype = {article}
}